Publications

Balthazar P, Tucunduva DC, Luce MJ, Scott MS. (2017) Widespread pre-translational regulation of the inclusion of signal peptides in human proteins. Genomics Jan 22.

Jammali S, Kuitche E, Rachati A, Bélanger F, Scott M, Ouangraoua A. (2017) Aligning coding sequences with frameshift extension penalties. Algorithms Mol Biol .

Armero VES, Tremblay MP, Allaire A, Boudreault S, Martenon-Brodeur C, Duval C, Durand M, Lapointe E, Thibault P, Tremblay-Létourneau M, Perreault JP, Scott MS, Bisaillon M. (2017) Transcriptome-wide analysis of alternative RNA splicing events in Epstein-Barr virus-associated gastric carcinomas. PLoS ONE .

Ono M, Yamada K, Bensaddek D, Afzal V, Biddlestone J, Ortmann B, Mudie S, Boivin V, Scott MS, Rocha S, Lamond AI. (2016) Enhanced snoMEN Vectors Facilitate Establishment of GFP-HIF-1α Protein Replacement Human Cell Lines. PLoS ONE .

Luce MJ, Akpawu AA, Tucunduva DC, Mason S, Scott MS. (2016) Extent of pre-translational regulation for the control of nucleocytoplasmic protein localization. BMC Genomics .

Boudreault S, Martenon-Brodeur C, Caron M, Garant JM, Tremblay MP, Armero VE, Durand M, Lapointe E, Thibault P, Tremblay-Létourneau M, Perreault JP, Scott MS, Lemay G, Bisaillon M. (2016) Global Profiling of the Cellular Alternative RNA Splicing Landscape during Virus-Host Interactions. PLoS ONE .

Tremblay MP, Armero VE, Allaire A, Boudreault S, Martenon-Brodeur C, Durand M, Lapointe E, Thibault P, Tremblay-Létourneau M, Perreault JP, Scott MS, Bisaillon M. (2016) Global profiling of alternative RNA splicing events provides insights into molecular differences between various types of hepatocellular carcinoma. BMC Genomics .

Garant JM, Luce MJ, Scott MS, Perreault JP. (2015) G4RNA: an RNA G-quadruplex database. Database (Oxford) Jun 17.

Nguyen D, Grenier St-Sauveur V, Bergeron D, Dupuis-Sandoval F, Scott MS, Bachand F. (2015) A Polyadenylation-Dependent 3' End Maturation Pathway Is Required for the Synthesis of the Human Telomerase RNA. Cell Rep Dec 15.

Dupuis-Sandoval F, Poirier M, Scott MS. (2015) The emerging landscape of small nucleolar RNAs in cell biology. WIREs RNA Apr 16.

Deschamps-Francoeur G, Garneau D, Dupuis-Sandoval F, Roy A, Frappier M, Catala M, Couture S, Barbe-Marcoux M, Abou-Elela S, Scott MS. (2014) Identification of discrete classes of small nucleolar RNA featuring different ends and RNA binding protein dependency. Nucleic Acids Res. Jul 29.

Scott MS, Ono M, Yamada K, Endo A, Barton GJ, Lamond AI. (2012) Human box C/D snoRNA processing conservation across multiple cell types. Nucleic Acids Res. Apr.

Scott MS, Ono M. (2011) From snoRNA to miRNA: Dual function regulatory non-coding RNAs. Biochimie Nov.

Ono M, Scott MS, Yamada K, Avolio F, Barton GJ, Lamond AI. (2011) Identification of human miRNA precursors that resemble box C/D snoRNAs. Nucleic Acids Res. May.

Scott MS, Troshin PV, Barton GJ. (2011) NoD: a Nucleolar localization sequence detector for eukaryotic and viral proteins. BMC Bioinformatics .

Scott MS, Boisvert FM, Lamond AI, Barton GJ. (2011) PNAC: a protein nucleolar association classifier. BMC Genomics .

Scott MS, Boisvert FM, McDowall MD, Lamond AI, Barton GJ. (2010) Characterization and prediction of protein nucleolar localization sequences. Nucleic Acids Res. Nov.

Ono M, Yamada K, Avolio F, Scott MS, van Koningsbruggen S, Barton GJ, Lamond AI. (2010) Analysis of human small nucleolar RNAs (snoRNA) and the development of snoRNA modulator of gene expression vectors. Mol. Biol. Cell May 1.

Scott MS, Avolio F, Ono M, Lamond AI, Barton GJ. (2009) Human miRNA precursors with box H/ACA snoRNA features. PLoS Comput. Biol. Sep.

McDowall MD, Scott MS, Barton GJ. (2009) PIPs: human protein-protein interaction prediction database. Nucleic Acids Res. Jan.

Jansen G, Lee AY, Epp E, Fredette A, Surprenant J, Harcus D, Scott M, Tan E, Nishimura T, Whiteway M, Hallett M, Thomas DY. (2009) Chemogenomic profiling predicts antifungal synergies. Mol. Syst. Biol. .

Han X, Feng X, Rattner JB, Smith H, Bose P, Suzuki K, Soliman MA, Scott MS, Burke BE, Riabowol K. (2008) Tethering by lamin A stabilizes and targets the ING1 tumour suppressor. Nat. Cell Biol. Nov.

Scott MS, Barton GJ. (2007) Probabilistic prediction and ranking of human protein-protein interactions. BMC Bioinformatics .

Kislinger T, Cox B, Kannan A, Chung C, Hu P, Ignatchenko A, Scott MS, Gramolini AO, Morris Q, Hallett MT, Rossant J, Hughes TR, Frey B, Emili A. (2006) Global survey of organ and organelle protein expression in mouse: combined proteomic and transcriptomic profiling. Cell Apr 7.

Scott MS, Oomen R, Thomas DY, Hallett MT. (2006) Predicting the subcellular localization of viral proteins within a mammalian host cell. Virol. J. .

Scott MS, Calafell SJ, Thomas DY, Hallett MT. (2005) Refining protein subcellular localization. PLoS Comput. Biol. Nov.

Scott MS, Perkins T, Bunnell S, Pepin F, Thomas DY, Hallett M. (2005) Identifying regulatory subnetworks for a set of genes. Mol. Cell Proteomics May.

Larocque D, Galarneau A, Liu HN, Scott M, Almazan G, Richard S. (2005) Protection of p27(Kip1) mRNA by quaking RNA binding proteins promotes oligodendrocyte differentiation. Nat. Neurosci. Jan.

Scott MS, Thomas DY, Hallett MT. (2004) Predicting subcellular localization via protein motif co-occurrence. Genome Res. Oct.

Scott M, Lu G, Hallett M, Thomas DY. (2004) The Hera database and its use in the characterization of endoplasmic reticulum proteins. Bioinformatics Apr 12.

Vieyra D, Loewith R, Scott M, Bonnefin P, Boisvert FM, Cheema P, Pastyryeva S, Meijer M, Johnston RN, Bazett-Jones DP, McMahon S, Cole MD, Young D, Riabowol K. (2002) Human ING1 proteins differentially regulate histone acetylation. J. Biol. Chem. Aug 16.

Scott M, Bonnefin P, Vieyra D, Boisvert FM, Young D, Bazett-Jones DP, Riabowol K. (2001) UV-induced binding of ING1 to PCNA regulates the induction of apoptosis. J. Cell. Sci. Oct.

Scott M, Boisvert FM, Vieyra D, Johnston RN, Bazett-Jones DP, Riabowol K. (2001) UV induces nucleolar translocation of ING1 through two distinct nucleolar targeting sequences. Nucleic Acids Res. May 15.