Crew & Contacts

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photo of Michelle Scott

Michelle Scott

Department of Biochemistry, Université de Sherbrooke
Principal Investigator

Michelle(dot)Scott(at)USherbrooke(dot)ca

Michelle completed an undergraduate degree at the University of Montreal in Biochemistry and a Masters degree at the University of Calgary in Biochemistry and Molecular Biology followed by several semesters in computer engineering before discovering Bioinformatics. Following this revelation, she undertook a PhD in Bioinformatics at McGill University in Montreal under the co-supervision of Mike Hallett and David Thomas, studying the prediction and characterization of protein localization in the cell. She then moved to Geoff Barton's group at the University of Dundee in Scotland for her postdoc. Amongst her research interests during this time, she investigated the prediction of protein-protein interactions in human and the localization of proteins in the nucleolus, creating the predictors PIPs (human protein-protein interaction predictor) and NoD (nucleolar localization sequence detector). During this time, she also got intiated into the marvelous world of RNA (and particularly snoRNAs) by members of the Lamond group.

Michelle is currently an associate professor in the Department of Biochemistry at the University of Sherbrooke, and a member of the Riboclub.
photo of Anna Akuvi Kafui Akpawu

Anna Akuvi Kafui Akpawu

Department of Biochemistry, Université de Sherbrooke
MSc candidate
Graduated

In 2011 Got her Bsc (with Honours) from Carleton University in Biochemistry/biotechnology. (Ottawa)

Then worked as a research assistant for Tranzyme Pharma (Sherbrooke) for a year, decided to stay in Sherbrooke and do her masters. She first did an internship in winter 2012 in Scott’s lab and was Dr. Scott’s first Msc. Student. Her project: ‘Study of the pre-translational regulation of the inclusion of protein localization motif’.

‘I’m lucky to have a diverse background (from Togo  and Philippines) and up for new challenges!’.

photo of Philippe Balthazar

Philippe Balthazar

Department of Informatic Engineering, Université de Sherbrooke
Intern


Philippe completed his bachelor degree in biochemestry from Université de Sherbrooke since 2014 and is currently doing is  bachelor degree in computer engineering. His internship in professor Michelle Scott's lab mixes well these two passions.

photo of Mélodie Berthoumieux

Mélodie Berthoumieux

Department of Biochemistry, Université de Sherbrooke
MSc student

Melodie(dot)Berthoumieux(at)USherbrooke(dot)ca

Mélodie obtained a cellular bilogy and physiologie license as well as a master in biohealth : genes, cells and development at Université Pauls Sabatier in Toulouse, France.

A major proportion of biological analysis are heading toward high-troughput methods. Mélodie went through a bioinformatic formation at Université de Toulouse in order to understand and analyse by herself every steps of her future research.

It led her to join Michelle Scott's research group in co-direction with Sherif Abou Elela as a M.Sc candidate.

Despite the obvious challenges a young woman from southern France must face to adapt to the climate and public transport network of Sherbrooke, Mélodie's french accent from Toulouse survived the winter.

photo of Vincent Boivin

Vincent Boivin

Department of Biochemistry, Université de Sherbrooke
PhD student
The Recycler
Vincent(dot)Boivin2(at)USherbrooke(dot)ca

Vincent obtained his bachelor molecular biology at the University of Sherbrooke and then began his master degree on the implication of snoRNAs in the regulation of alternative splicing and the expression of transcripts at Michelle Scott’s bioinformatics lab. He was born in the depths of the forest in the small county of La Tuque where he became an adept of hunting, fishing, botanic and mycology.

photo of Gabrielle Deschamps-Francoeur

Gabrielle Deschamps-Francoeur

Department of Biochemistry, Université de Sherbrooke
PhD candidate

Gabrielle(dot)Deschamps-Francoeur(at)USherbrooke(dot)ca

Gabrielle obtained a bachelor's degree in biotechnological engineering from the University of Sherbrooke. She started her master’s degree in May 2016 in Professor Michelle Scott's group in which she completed two internships during her undergraduate studies. In January 2018, she did a fast-track to a doctorate taking interest in machine learning. Among her hobbies are baking and horticulture, both of which are well appreciated by her colleagues!

photo of Michaël Desgagné

Michaël Desgagné

Department of Biochemistry, Université de Sherbrooke
Intern


Third year bachelor's student in biochemistry at Sherbrooke's university. Intern at Michelle Scott's lab, supervised by Eric Massé in the microbiome characterisation project.

photo of Fabien Dupuis-Sandoval

Fabien Dupuis-Sandoval

Department of Biochemistry, Université de Sherbrooke
MSc candidate


Graduated from Bishop's University in 2014 with a B.Sc. in Biochemistry. Fabien joined Dr.Scott's lab in 2013 and started learning computer sciences. His main focus is in the characterization of snoRNA species.

photo of Jean-Michel Garant

Jean-Michel Garant

Department of Biochemistry, Université de Sherbrooke
PhD candidate

Jean-Michel(dot)Garant(at)USherbrooke(dot)ca

Jean-Michel is a PhD candidate co-directed by professors Jean-Pierre Perreault and Michelle Scott since January 2014. He completed his bachelor degree at Université de Sherbrooke in biochemistry. Jean-Michel is the current webmaster and developper of G4RNA's tools.

photo of Lori Girard-Dumont

Lori Girard-Dumont

Department of Computer Sciences, Bishop's University
Intern
Graduated

Lori is currently doing a bioinformatic internship in Dr. Scott and Dr. Bachand’s laboratory and will start her third and last year of undergraduate studies in the field of computer science at Bishop’s University. When she isn’t in the lab, Lori can be found speeding down a ski slope or relaxing while fishing on a lake. She is also a huge Harry Potter fan!

photo of Safa Jammali

Safa Jammali

Department of Computer Science, Université de Sherbrooke
PhD student

Safa(dot)Jammali(at)USherbrooke(dot)ca

Safa is a PhD student in Computer Sciences with Bioinformatics profile at "Université de Sherbrooke". She is studying under the supervision of Pr. Aïda Ouangraoua and Pr. Michelle Scott. Her project is focused on representation and prediction of genes structures.

She holds a geomatic master degree with remote sensing specialization from "Université de Sherbrooke", in which she performed a computational analysis of NASA satellite images in order to estimate the soil moisture in forest areas. She received her bachelor's degree in mathematics-informatics from the faculty of sciences of Sfax in Tunisia.

photo of Mikael Luce

Mikael Luce

Department of Computer Science, Université de Sherbrooke
Intern


Mikael completed a Business Informatics college diplome at "CEGEP de Rimouski". That formation gave  him possibilities to work in science. Then he has been hired at Maurice Lamontagne Institute (MLI) as a technician and after, at Laurentian Forestry Centre (LFC) as a programmer for Guy LaRocque on the ZELIG-CFS gap model, a forest succession model.

As soon as he got his college diploma, he knew that he would going to go to study at university which he began in fall of 2013 at University of Sherbrooke.

In the context of his undergraduated formation, he completed two internships as a programmer for Michelle Scott where he, amongst others, built the content management system (CMS) used to manage the current website and contribute on the implementation of G4RNA and AS-MOTIF (comming soon).

photo of Darren Mathurin St-Pierre

Darren Mathurin St-Pierre

Department of Biochemistry, Université de Sherbrooke
Intern


Student in Biochemistry at Université de Sherbrooke, his college background in Mathematics and Computer Science inspired Darren to pursue research credits followed by an intership in bioinformatics with professor Michelle Scott, PhD.

photo of Mikaël Poirier

Mikaël Poirier

Department of Biochemistry, Université de Sherbrooke
Intern
Graduated

Undergraduate student in health biochemistry at Université de Sherbrooke and graduated from Saint-Hyacinthe college in biotechnology laboratory technical formation. He is a sympathic medieval age and martial arts junky, but can bite during full moon nights.

photo of Félix Primeau

Félix Primeau

Department of Mathematic, Université de Sherbrooke
Intern


Bachelor student in pure mathematics at Université de Sherbrooke and currently intern in Michelle Scott's laboratory working on the alternative proteins project, co-supervised by Xavier Roucou.

photo of Gabriel Robert

Gabriel Robert

Department of Biochemistry, Université de Sherbrooke
Intern


Bachelor student in biochemistry at Université de Sherbrooke and currently intern in Michelle Scott's laboratory for her project of intestinal microbiome characterisation, co-supervised by Eric Massé.

photo of Audrey Roy

Audrey Roy

Department of Medicine, Université de Sherbrooke
MD - MSc candidate


Audrey has been studying medecine for two years at the Université de Sherbrooke. She did two interships in Michelle Scott’s lab in 2013 and 2014. She is now completing a master degree in order to get a M.D.-M.Sc. diploma, which will allow her to combine research and clinical practice. She is working on the characterisation of the snoRNAs.

photo of Sondos Samandi

Sondos Samandi

Department of Biochemistry, Université de Sherbrooke
Post-doctoral Fellow


Actually a Postdoc in bioinformatic for Pr Xavier Roucou and Pre Michelle Scott at Université de Sherbrooke.

Obtained her Ph.D in bioinformatic (Université de sciences de Tunis 2009-2014) et her master in bioinformatic (Université de Québec à Montréal 2014-2015)

Fencer in the National Tunisian Fencing Team (1994-2008), qualified for Athens Olympic games in 2004, Africa Champion in 2003 and gold medalist of Arabic countries championship (2003, 2004, 2005).

photo of Joël Simoneau

Joël Simoneau

Department of Biochemistry, Université de Sherbrooke
MSc student

Joel(dot)Simoneau(at)USherbrooke(dot)ca

Joël is a biotechnological engineer bachelor student of Université de Sherbrooke and spent the 2017 winter session in Michelle Scott’s laboratory. During his stay, Joël worked on the regulation of proteins localization with a particular interest to nuclear proteins intended for mitochondria. Joël also had the opportunity to write a text about himself at the third person.

photo of Yvan Tran

Yvan Tran

Department of Computer Science, Université de Sherbrooke
Intern


Yvan is currently doing a bio-informatic internship for Pr Scott's laboratory as an undergraduate student in computer science.

Having lived more than a thousand year, Yvan is currently in the process of perfecting a tool which purpose is hiding in the depths of the abyss.

Nevertheless,some rumors tell the legend of a certain project consisting of providing a graphical representation of a gene, its transcripts, its exons and its domains for every one to use. But rumors will always be rumors right?

When he is away from the lab, Yvan can be seen sleeping all day long, gaming, watching movies/series, chilling at restaurants and cinemas, reading and watching various things from the range of scientific articles to the infamous "Epic sax guy 10 hours".

photo of Daniel Tucunduva

Daniel Tucunduva

Department Computer Science, Bishop's University
Intern


Daniel got a bachelor degree in Law in Brazil, then went on to doing two years of Medicine before accepting a scholarship to study Computer Science for one year in Canada. Evidently a very usual path. Much to his surprise and happiness, what should be a temporary detour turned out to be the best decision of his life, and he is now a happy computer scientist in the making. Daniel is excited to join Pr. Scott's group and use computer science allied to his bit of background from medicine.

photo of Delong Zhou

Delong Zhou

Department of Microbiology, University of Sherbrooke
PhD candidate

Delong(dot)Zhou(at)USherbrooke(dot)ca

Delong obtained an engineer degree from École Centrale Paris in 2012.

Since April 2013 he joined the lab of Sherif Abou Elela in co-direction with Michelle Scott to study how the regulation of alternative splicing is implied in the biology of ovarian cancer.

Hardcore gamer and proud veteran of the HORDE.

photo of Hoang Dong Nguyen

Hoang Dong Nguyen

Department of Biochemistry, Université de Sherbrooke
PhD student

Hoang(dot)Dong(dot)Nguyen(at)USherbrooke(dot)ca

Hoang Dong completed a bachelor in biology at the Paul Sabatier University of Toulouse. In order to finalize his master degree in bioinformatics, he obtained a intership for the winter session at the bioinformatic lab of Michelle Scott, co-supervised by Maxime Richer and Andréa Allaire with the aim of discovering new molecular and genetic biomarkers that would allow for a reliable classification of humain brain cancer malignancy.

 

Hoang Dong, with his common contraction Hoang, discovered that he loved bioinformatic as much as Quebec beers.

photo of Étienne  Fafard-Couture

Étienne Fafard-Couture

Department of Biochemistry, Université de Sherbrooke
MSc Student

Etienne(dot)Fafard-Couture(at)USherbrooke(dot)ca

Étienne obtained a bachelor's degree in molecular and cellular biology from the Université de Sherbrooke in December 2019. During that time, he completed his T2 intership in Michelle Scott's lab in fall 2018 returned during the subsequent winter and fall semesters to do research credits. He has now started his master's degree; his project centers around the charactarization of the human snoRNome.

 

As indicated by his profile picture, Étienne loves climbing up and skiing down mountains!

photo of Clément Desjardins-Henri

Clément Desjardins-Henri

Department of Computer Sciences, Université de Sherbrooke
Intern

Clement(dot)Desjardins-Henri(at)USherbrooke(dot)ca
Graduated from Cegep Lionel-Groulx in Mathematic and Computer Sciences and bachelor's student at Université de Sherbrooke in Imaging and Digital Media Sciences. He works on a heatmap tool for the snoDB project. Always salutes with the devil horns because he's 60% made of liquid metal.
photo of Tommy Duval

Tommy Duval

Departement of Biology, Université de Sherbrooke
Intern

Tommy(dot)Duval2(at)USherbrooke(dot)ca

Tommy is a 3rd year student at the university of Sherbrooke in molecular biology. He is doing his 3rd internship in Michelle's laboratory analysing RNA-RNA  interaction data implicating snoRNAs.

photo of Gaspard Reulet

Gaspard Reulet

Department of Biochemistry, Université de Sherbrooke
MSc Student

Gaspard(dot)Reulet(at)USherbrooke(dot)ca

Gaspard obtained a bachelor's degree in biology from the Université de Sherbrooke in April 2019. Since he started in professor Michelle Scott's group in the winter of 2018 for research credits, he has never left the laboratory and started his master's degree in May 2019. Using new RNA-seq methodologies, Gaspard is interested in correctly characterizing the budding yeast's transcriptome  and improving it's genomic annotation.
He also stands for reproducible science and it will be his pleasure to tell you about Snakemake. On his free time, Gaspard can be found road/mountain biking, climbing, backcountry skiing, playing outdoors.

 

photo of Laurence Faucher-Giguère

Laurence Faucher-Giguère

Department of Microbiology, Université de Sherbrooke
PhD student

Laurence(dot)Faucher(dot)Giguere(at)USherbrooke(dot)ca

Laurence graduated from Bishop's University in Biochemistry. She began her master's degree in the summer of 2018 in the laboratory of Sherif Abou Elela codirected with Michelle Scott. Her project is about understanding the role and mechanism of overexpressed snoRNAs in high-grade ovarian cancer to discover biomarkers as earlier diagnostic tools for this very aggressive cancer.​

photo of Stacey Carpentier

Stacey Carpentier

Department of Chemical Engineering and Biotechnology Engineering, Université de Sherbrooke
Intern

Stacey(dot)Carpentier(at)USherbrooke(dot)ca

Stacey is a bachelor's student in biotechnological engineering and is currently completing her second year. She is doing her second internship in Michelle Scott's laboratory where she is working for the first time in bioinformatics, a field she affectionates particularly. Outdoor enthusiast, she spends a lot of time in the mountains, on race tracks and on icy trails. Pretty involved with her university, she is an active member of the Groupe de Collaboration Internationale de l'Université de Sherbrooke (GCIUS) with which she will carry out an international cooperation project in India in the fall of 2020.

photo of Danny Bergeron

Danny Bergeron

Department of Biochemistry, Université de Sherbrooke
PhD student

Danny(dot)Bergeron(at)USherbrooke(dot)ca

Danny obtained a bachelor and master's degree in biochemistry from the Université de Sherbrooke in 2011 and 2013 respectively. During the next 6 years, he worked as a Research Assistant in a laboratory focused on, among other things, post-transcriptional gene regulation and ribosome biogenesis. In 2017, in his spare time, Danny began discovering the basics of computer programming. Already a big fan of puzzles and problem solving, he rapidly developed a passion for it. This led to the decision to merge biology and computer sciences in 2019, where he began a PhD degree in Pr. Scott's group. His main project is focused on the study of snoRNAs non-canonical functions.

photo of Jean Vencic

Jean Vencic

Department of Biochemistry, Université de Sherbrooke
PhD student

Jean(dot)Vencic(at)USherbrooke(dot)ca

Jean obtained a bachelor's degree in biology and is completing his master's degree in Bioinformatics from Paris-Saclay University with a 6 months internship in Michelle Scott's group since mid-March. Based on the recent advances in G-quadruplex (G4) prediction and study in the human transcriptome, the aim of the interniship is to explore more precisely if there are specificities regarding the nervous system transcriptom.

Apart from his subject, Jean is enthousiastic about reproductibility and loves to find better ways to program.

photo of Kristina Song

Kristina Song

Department of Biochemistry, Université de Sherbrooke
Intern

Kristina(dot)Song(at)USherbrooke(dot)ca

Kristina is a third year undergraduate student at McGill University joint-majoring in computer science and biology. She is currently doing a 6 months internship in Michelle Scott’s lab studying the yeast transcriptome to see if there are any corrections to be made to the current yeast genome annotation. Outside of the lab, Kristina likes to try new foods and watch Youtube videos.

photo of Annabelle Calvé

Annabelle Calvé

Department of Biochemistry, Université de Sherbrooke
Intern

Annabelle(dot)Calve(at)USherbrooke(dot)ca

Annabelle is an undergraduate student in biochemistry at the Université de Sherbrooke. She is currently carrying out her first experiments in bioinformatics as part of her T2 internship with Michelle Scott's laboratory team. Her project is focused on determining the presence of polymorphisms in human snoRNAs. 

Leaving her scientific side for her studies, Annabelle enjoys exploring her artistic side in her spare time, especially with her project to write a fantasy novel. 

photo of Cédric Laforest

Cédric Laforest

Department of Biochemistry, Université de Sherbrooke
Intern

Cedric(dot)Laforest(at)USherbrooke(dot)ca

Cédric is a student in biotechnological engineering. Cédric is currently in an internship in professor Michelle Scott's lab. He is working on the classification of snoRNA based on sequence identity. In his free time, Cédric brews beers and reads sci-fi books.